Below is a list of Health Informatics research group articles published in scientific journals together with a selection of posters presented in various international conferences. View also the list of completed bachelor, masters and doctoral thesis.
Särg, D; Sirts, K; Krebs, K; Tamm, M; Metsküla, A; Oja, M; Laur, S; Vilo, J; Milani, L.
Text-based approach for detecting cases of ADEs from EHRs of participants of the Estonian Biobank
Informatics in Medicine Unlocked, 59, 2025. https://doi.org/10.1016/j.imu.2025.101701
Loo, L; Oja, M; Tamm, S; Kolde, R; Tillmann, T.
From data to prevention: early cardiovascular disease risk modeling with national health records
European Heart Journal, Vol 46, Issue Supplement_1, ehaf784.4496, 2025. DOI: 10.1093/eurheartj/ehaf784.4496
López-Güell, K; Català, M; Dedman, D; Duarte-Salles, T; Kolde, R; et al.
Clusters of post-acute COVID-19 symptoms: a latent class analysis across 9 databases and 7 countries
Journal of Clinical Epidemiology, Vol 185, 2025. DOI: 10.1016/j.jclinepi.2025.111867.
Lõo, L; Umov, N; Oja, M; Reisberg, S; Uusküla, A; Kolde, R; Tillmann, T.
Malk, M; Mooses, K; Oja, M; Holm, J; Keidong, H; Umov, N; Tamm, S; Reisberg, S; Vilo, J; Kolde, R.
medRxiv 2025.09.03.25335007, 2025. DOI: 10.1101/2025.09.03.25335007
Milani, L; Alver, M; Laur, S; Reisberg, S; Haller, T; Aasmets, O; Abner, E; Alavere, H; Allik, A; Annilo, T; Fischer, K; Hofmeister, R; Hudjashov, G; Jõeloo, M; Kals, M; Karo-Astover, L; Kasela, S; Kolde, A; Krebs, K; Krigul, K L; Kronberg, J; Kruusmaa, K; Kukuškina, V; Kõiv, K; Lehto, K; Leitsalu, L; Lind, S; Luitva, L B; Läll, K; Lüll, K; Metsalu, K; Metspalu, M; Mõttus, R; Nelis, M; Nikopensius, T; Nurm, M; Nõukas, M; Oja, M; Org, E; Palover, M; Palta, P; Pankratov, V; Pantiukh, K; Pervjakova, N; Pujol-Gualdo, N; Reigo, A; Reimann, E; Smit, S; Rogozina, D; Särg, D; Taba, N; Talvik, H A; Teder-Laving, M; Tõnisson, N; Vaht, M; Vainik, U; Võsa, U; Yelmen, B; Esko, T; Kolde, R; Mägi, R; Vilo, J; Laisk, T; Metspalu, A.
The Estonian Biobank’s journey from biobanking to personalized medicine
Nat Commun 16, 3270, 2025. https://doi.org/10.1038/s41467-025-58465-3
Pineda-Moncusí, M; Rekkas, A; Martínez Pérez, Á M; Leis, A; Lopez Gomez, C L; Fey, E; Bruninx, E; Maljković, F; Sánchez-Sáez, F; Rodeiro-Boliart, J; Zsuzsa Kiss, L Z; Franz, M; Mayer, M; Eleangovan, N; Pericàs Pulido, P P; Natsiavas, P; Şen, S; Cooper, S; Reisberg, S; et al.
The Lancet Public Health, Volume 10, Issue 10, e835 – e847, 2025. DOI: 10.1016/S2468-2667(25)00194-X
Català, M; Li, X; Jödicke, A; Prats-Uribe, A; Delmestri, A; Verhamme, K; Mosseveld, M; Brash, J T; Vojinovic, D; Palomar-Cros, A; Pérez Crespo, L; Duarte-Salles, T; Oja, M; Kolde, R; Burn, E; Umuhire, D; Morales, D R.
Preprint.
Rajwa, P; Borkowetz, A; Abbott, T; Alberti, A; Beyer, K; Bjartell, A; Brash, J T; Chilelli, A; Davies, E; De Meulder, B; Fazekas, T; Golozar, A; Hijazy, A; Josefsson, A; Kasivisvanathan, V; Kolde, R; et al.
Xie, J; Du, M; Guo, Y; Barboza, C; Brash, J T; Delmestri, A; Duarte-Salles, T; Gratton, J; Griffier, R; Kolde, R; Man, W Y; Mercadé-Besora, N; Oja, M; Seager, S; Verhamme, K; Vojinovic, D; Burn, E; Prieto-Alhambra, D; Català, M; Jödicke, A M.
Front. Pharmacol. Sec. Pharmacoepidemiology, 16, 2025, doi: 10.3389/fphar.2025.1608051
Šuvalov, H; Lepson, M; Kukk, V; Malk, M; Ilves, N; Kuulmets, H A; Kolde, R.
J Med Internet Res 2025;27:e66279. doi: 10.2196/66279
Mooses, K; Oja, M; Malk, M; Loorents, H; Pajusalu, M; Umov, N; Tamm, S; Holm, J; Keidong, H; Tillmann, T; Reisberg, S; Vilo, J; Kolde, R.
medRxiv 2025.02.10.25319884. https://doi.org/10.1101/2025.02.10.25319884
Talvik, H A; Oja, M; Tamm, S; Mooses, K; Särg, D; Lõo, M; Siimon, Õ R; Šuvalov, H; Kolde, R; Vilo, J; Reisberg, S; Laur, S.
Repeatable process for extracting health data from HL7 CDA documents
Journal of Biomedical Informatics, 2025; 161. doi: https://doi.org/10.1016/j.jbi.2024.104765.
Reisberg, S; Mooses, K; Kolde, R; Kõrgvee, L T; Vilo, J.
Uudne lähenemine – OMOP-andmemudelil põhinevad terviseuuringud
Eesti Arst, 2024; 103:420–429.
Pineda-Moncusí, M; Rekkas, A; Martínez Pérez, Á M; Leis, A; Lopez Gomez, C L; Fey, E; Bruninx, E; Maljković, F; Sánchez-Sáez, F; Rodeiro, J; Zsuzsa Kiss, L Z; Franz, M; Mayer, M; Eleangovan, N; Pulido Pau, P P; Natsiavas, P; Şen, S; Cooper, S; Reisberg, S; et al.
Pajusalu, M; Mooses, K; Oja, M; Tamm, S; Haug, M; Kolde, R.
TrajectoryViz: Interactive visualization of treatment trajectories
Informatics in Medicine Unlocked. 2024; 49. doi: https://doi.org/10.1016/j.imu.2024.101558
Rajwa, P; Borkowetz, A; Abbott, T; Alberti, A; Bjartell, A; Brash, J T; Campi, R; Chilelli, A; Conover, M; Constantinovici, N; Davies, E; De Meulder, B; Eid, S; Gacci, M; Golozar, A; Hafeez, H; Haque, S; Hijazy, A; Hulsen, T; Josefsson, A; Khalid, S; Kolde, R; Kotik, D; Kurki, S; Lambrecht, M; Leung, C H; Moreno, J; Nicoletti, R; Nieboer, D; Oja, M; Palanisamy, S; Prinsen, P; Reich, C; Resta, G R; Ribal, M J; Rivas, J G; Smith, E; Snijder, R; Steinbeisser, C; Vandenberghe, F; Cornford, P; Evans-Axelsson, S; N’Dow, J; Willemse, P P M.
European Urology Open Science. 2024; 63:81-88. DOI: 10.1016/j.euros.2024.02.019
Alver, M; Kaselaa, S; Haring, L; Luitva, L B; Estonian Biobank Research Team; Health Informatics Research Team; Fischer, K; Möls, M; Milani, L.
The Lancet Regional Health – Europe, Vol 41, 100914, 2024. DOI: DOI: 10.1016/j.lanepe.2024.100914
Mooses, K; Šavrova, A; Pajusalu, M; Oja, M; Tamm, S; Haug, M; Padrik, L; Laanpere, M; Uusküla, A; Kolde, R.
Preventive Medicine, 183, 2024. DOI: 10.1016/j.ypmed.2024.107982
Burkard, T; López-Güell, K; Gorbachev, A; Bellas, L; Jödicke, A M; Burn, E; de Ridder, M; Mosseveld, M; Gratton, J; Seager, S; Vojinovic, D; Mayer, M A; Ramírez-Anguita, J M; Machín, A L; Oja, M; Kolde, R; Bonadt, K; Prieto-Alhambra, D; Reich, C; Català, M.
Calculating daily dose in the Observational Medical Outcomes Partnership Common Data Model.
Pharmacoepidemiol Drug Safety. 2024; 33(6):e5809. DOI:10.1002/pds.5809
Xie, J; López-Güell, K; Dedman, D; Duarte-Salles, T; Kolde, R; et al.
eClinicalMedicine, Volume 77, 102903, 2024. DOI: DOI: 10.1016/j.eclinm.2024.102903
Haug, M; Oja, M; Pajusalu, M; Mooses, K; Reisberg, S; Vilo, J; Giménez, A F; Falconer, T; Danilović, A; Maljkovic, F; Dawoud, D; Kolde, R.
Markov modeling for cost-effectiveness using federated health data network
Journal of the American Medical Informatics Association, 2024; ocae044, DOI: 10.1093/jamia/ocae044
Uusküla, A; Oja, M; Tamm, S; Tisler, A; Laanpere, M; Padrik, L; Nygard, M; Reisberg, S; Vilo, J; Kolde, R.
Eesti Arst, 2024. 103(2):100
Markus, A F; Rijnbeek, P R; Kors, J A; Burn, E; Duarte-Salles, T; Haug, M; Kim, C; Kolde, R; Lee, Y; Park, H S; Park, R W; Prieto-Alhambra, D; Reyes, C; Krishnan, J A; Brusselle, G G; Verhamme, K M C.
Real-world treatment trajectories of adults with newly diagnosed asthma or COPD
Mercadé-Besora, N; Li, X; Kolde, R; Trinh, N T H; Sanchez-Santos, M T; Man, W Y; Roel, E; Reyes, C; Delmestri, A; Nordeng, H M E; Uusküla, A; Duarte-Salles, T; Prats, C; Prieto-Alhambra, D; Jödicke, A M; Català, M.
Heart 2024;0:1–9. DOI:10.1136/heartjnl-2023-323483
Oja, M; Tamm, S; Mooses, K; Pajusalu, M; Talvik, H A; Ott, A; Laht, M; Malk, M; Lõo, M; Holm, J; Haug, M; Šuvalov, H; Särg, D; Vilo, J; Laur, S; Kolde, R; Reisberg, S.
JAMIA Open, 2023: 6 (4). DOI: 10.1093/jamiaopen/ooad100
Uusküla, A; Oja, M; Tamm, S; Tisler, A; Laanpere, M; Padrik, L; Nygard, M; Reisberg, S; Vilo, J; Kolde, R.
JAMA Network Open, 2023:6 (2), e2254075. DOI: 10.1001/jamanetworkopen.2022.54075
Leitsalu, L; Reigo, A; Palover, M; Nikopensius, T; Läll, K; Krebs, K; Reisberg, S; Mägi, R; Kals, M; Alavere, H; Nõukas, M; Kolk, A; Normet, I; Tammesoo, M.L; Käärik, E; Puusepp, M; Metsalu, K; Allik, A; Milani, L; Fischer, K; Tõnisson, N; Metspalu, A.
Eur J Hum Genet 31, 1048–1056, 2023. DOI: 10.1038/s41431-022-01196-6
Kurvits, S; Harro, A; Reigo, A; Ott, A; Laur, S; Särg, D; Tampuu, A; Alasoo, K; Vilo, J; Milani, L; Haller, T.
Eur J Med Res 28, 133, 2023. DOI:10.1186/s40001-023-01087-6
Mooses K; Vesilind, K; Oja M; Tamm S; Haug M; Kalda R; Suija K, Tisler A, Meister T; Malk M, Uusküla A; Kolde R.
The use of prescription drugs and health care services during the 6‑month post‑COVID‑19 period
Scientific Reports, 2023:13, 11638100394. DOI: 10.1038/s41598-023-38691-9.
Gandaglia, G; Pellegrino, F; Golozar, A; De Meulder, B; Abbott, T; Achtman, A; Omar, M.I; Alshammari, T; Areia, C; Asiimwe, A; Beyer, K; Bjartell, A; Campi, R; Cornford, P; Falconer, T; Feng, Q; Gong, M; Herrera, R; Hughes, N; Hulsen, T; Kinnaird, A; Lai, L.Y.H; Maresca, G; Mottet, N; Oja, M; et al.
European Urology, 2023. DOI: 10.1016/j.eururo.2023.06.012
Jürisson, M; Milani, L; Saar, A; Pajusalu, S; Kalda, R; Fischer, K; Vilo, J; Starkopf, J; Solvak, M; Kaarna, K; Kingo, K; Metspalu, M.
Personaalmeditsiini keskuse loomisest Eestis
Eesti Arst, 2023.
Haug, M; Kolde, R; Oja, M; Pajusalu, M.
Modeling Patient Treatment Trajectories Using Markov Chains for Cost Analysis
Stud Health Technol Inform. 302:755-756, 2023. DOI: doi:10.3233/SHTI230258
Voss, E.A; Shoaibi, A; Lai, L.Y.H; Blacketer, C; Alshammari, T; Makadia, R; Haynes, K; Sena, A.G; Rao, G; van Sandijk, S; Fraboulet, C; Boyer, L; Le Carrour, T; Horban, S; Morales, D.R; Roldán, J.M; Ramírez-Anguita, J.M; Mayer, A; de Wilde, M; John, L.H; Duarte-Salles, T; Roel, E; Pistillo, A; Kolde, R; et al.
eClinicalMedicine. Part of THE LANCET Discovery Science, 2023:58. DOI: 10.1016/j.eclinm.2023.101932
Rosenberg, M; Thetloff, M; Tamm, S; Kuusk, K; Reisberg, S; Vilo, J.
Kroonilise neeruhaiguse levimus Eesti e-tervise andmete alusel
Meister, T; Pisarev, H; Kolde, R; Kalda, R; Suija, K; Milani, L; Karo-Astover, L; Piirsoo, M; Uusküla, A.
PLoS ONE, 2022:17, e0270192. DOI: 10.1371/journal.pone.0270192
Uusküla, A; Kalda, R; Solvak, M; Jürisson, M; Käärik, M; Fischer, K; Keis, A; Raudvere, U; Vilo, J; Peterson, H; Käärik, E; Metspalu, M; Jürgenson, T; Milani, L; Kolberg, L; Tiit, E.M; Vassil, K.
Public Health, Vol 205, pages 150-156, 2022. DOI: 10.1016/j.puhe.2022.02.004
Uusküla, A; Jürgenson T; Pisarev H; Kolde, R; Meister, T; Tisler, A; Suija, K; Kalda, R; Piirsoo, M; Fischer K.
Long-term mortality following COVID-19 infection: a national cohort study from Estonia
The Lancet Regional Health – Europe, 2022:100394. DOI: 10.1016/j.lanepe.2022.100394.
Gomez Rivas, J; Lai, L.Y.H; Chatzichristos, C; Van Hemelrijck, M; Beyer, K; Oja, M; Tamm, S; Reisberg, S; Vilo, J; Asiimwe, A; Steinbeisser, C; Bjartell, A; Sakalis, V; N’Dow, J.
European Urology, vol 81, pages S1551-S1552, 2022. DOI: 10.1016/S0302-2838(22)01130-7
Lepamets, M; Auwerx, C; Nõukas, M; Claringbould, A; Porcu, E; Kals, M; Jürgenson, T; Morris, A.P; Võsa, U; Bochud, M; Stringhini, S; Wijmenga, C; Franke, L; Peterson, H; Vilo, J; Lepik, K; Mägi, R; Kutalik, Z.
Omics-informed CNV calls reduce false-positive rates and improve power for CNV-trait associations
Human Genetics and Genomics Advances, Volume 3, Issue 4, 100133. 2022. DOI: 10.1016/j.xhgg.2022.100133
Yang, C; Williams, Ross D; Swerdel, JN; Almeida, JR; Brouwer, ES.; Burn, E; Carmona, L; Chatzidionysiou, K; Duarte-Salles, T; Fakhouri, W; Hottgenroth, A; Jani, M; Kolde, R; Kors, JA; Kullamaa, L; Lane, J; Marinier, K; Michel, A; Stewart, HM; Prats-Uribe, A … Rijnbeek, PR.
Seminars in Arthritis and Rheumatism, 2022:56, 152050. DOI: 10.1016/j.semarthrit.2022.152050
Künnapuu, K; Ioannou, S; Ligi, K; Kolde, R; Laur, S; Vilo, J; Rijnbeek, PR; Reisberg, S.
JAMIA Open, 2022:5 (1), 1−11. DOI: 10.1093/jamiaopen/ooac021
Ostrak, A; Randmets, J; Sokk, V; Laur, S; Kamm, L.
Implementing Privacy-Preserving Genotype Analysis with Consideration for Population Stratification
Cryptography, 2021:5 (3), ARTN 21. DOI: 10.3390/cryptography5030021.
Tamm, S; Raie, E; Käär, R; Oja, M; Reisberg, S.
Eesti Arst, 2020:99 (1), 6−15.
Laur, S; Orasmaa, S; Särg, D; Tammo, P.
EstNLTK 1.6: Remastered Estonian NLP Pipeline. Proceedings of the 12th Language Resources and Evaluation
Conference: International Conference on Language Resources and Evaluation (LREC), Marseille, France, 2020. European Language Resources Association, 7152−7160.
Krebs, K; Bovijn, J; Zheng, N; Lepamets, M; Censin, JC; Jürgenson, T; Särg, D; Abner, E; Laisk, T; Luo, Y; Skotte, L; Geller, F; Feenstra, B; Wang, W; Auton, A; Raychaudhuri, S; Esko, T; Metspalu, A; Laur, S… Fadista, J.
Genome-wide Study Identifies Association between HLA-B∗55:01 and Self-Reported Penicillin Allergy
The American Journal of Human Genetics, 2020:107 (4), 612−621. DOI: 10.1016/j.ajhg.2020.08.008.
James, G; Reisberg, S; Lepik, K; Galwey, N; Avillach, P; Kolberg, L; Mägi, R; Esko, T; Alexander, M; Waterworth, D; Loomis, AK; Vilo, J.
PLoS ONE, 2019:14 (4), ARTN e0215026. DOI: 10.1371/journal.pone.0215026.
Ward, DV; Hoss, AG; Kolde, R; van Aggelen, HC; Loving, J; Smith, SA; Mack, DA; Kathirvel, R; Halperin, JA; Buell, DJ; Wong, BE; Ashworth, JL; Fortunato-Habib, MM; Xu, L; Barton, BA; Lazar, P; Carmona, JJ; Mathew, J; Salgo, IS; Gross, BD … Ellison, RT, III.
Integration of genomic and clinical data augments surveillance of healthcare-acquired infections
Infection Control and Hospital Epidemiology, 2019:40 (6), 649−655. DOI: 10.1017/ice.2019.7
Reisberg, S; Galwey, N; Avillach, P; Sahlqvist, A.S; Kolberg, L; Mägi, R; Esko, T; Vilo, J; James, G.
International Journal of Immunogenetics, 46, 2, 49-58, 2019. DOI: 10.1111/iji.12413
Liivlaid, H; Eigo, N; Reisberg, S.
Eriarstiabi haigestumusstatistika võrdlus Tervise Arengu Instituudi ja Eesti Haigekassa andmetel
Eesti Arst, 2019:1, 17−26
Palover, M; Leitsalu, L; Krebs, K; Lall, K; Kals, M; Nikopensius, T; Reigo, A; Milani, L; Fischer, K; Magi, R; Allik, A; Kolk, B; Metsalu, K; Puusepp, M; Mikkel, K; Tammesoo, M; Pintsaar, E; Temberg, T; Reisberg, S; Vilo, J … Metspalu, A.
Reporting genetic risks to participants of the Estonian Biobank, Genome Center
European Journal of Human Genetics, 2019:27 (1), 544−545
Tasa T, Krebs K, Kals M, Mägi R, Lauschke VM, Haller T, Puurand T, Remm M, Esko T, Metspalu A, Vilo J, Milani L.
European Journal of Human Genetics, vol 27, 2, 442-454, 2019. DOI: 10.1038/s41431-018-0300-6
Reisberg, S; Krebs, K; Lepamets, M; Kals, M; Mägi, R; Metsalu, K; Lauschke, VM; Vilo, J; Milani, L.
Genetics in Medicine, 2019 DOI: 10.1038/s41436-018-0337-5
Tasa, T; Kalamees, R; Vilo, J; Lutsar, I; Metsvaht, T.
External evaluation of population pharmacokinetic models for vancomycin in neonates
Krebs, K; Tasa, T; Kals, M; Magi, R; Esko, T; Metspalu, A; Vilo, J; Milani, L.
European Journal of Human Genetics volume 27, pages 442–454, 2019. DOI: 10.1038/s41431-018-0300-6
Mooses, K; Oja, M; Reisberg, S; Vilo, J; Kull, M.
BMC Public Health, 2018:18. DOI: 10.1186/s12889-018-5752-7.
Bogdanov, D; Kamm, L; Laur, S; Sokk, V.
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018:15 (5), 1427−1432. DOI: 10.1109/TCBB.2018.2858818.
Sadama, H; Pihlaka, A; Kivila, A; Pihelgas, S; Jaago, M; Adler, P; Vilo, J; Vapalahti, O; Neuman, T; Lindholm, D; Partinen, M; Vaheri, A; Palm, K.
eBioMedicine, Volume 29, 47 – 59, 2018. DOI: 10.1016/j.ebiom.2018.01.043.
Bogdanov, D; Kamm, L; Laur, S; Sokk, V.
Rmind: A Tool for Cryptographically Secure Statistical Analysis
IEEE Transactions on Dependable and Secure Computing, 2018:15 (3), 481−495. DOI: 10.1109/TDSC.2016.2587623
Modhukur, V; Iljasenko, T; Metsalu, T; Lokk, K; Laisk-Podar, T; Vilo, J.
MethSurv: a web tool to perform multivariable survival analysis using DNA methylation data
Epigenomics, 10(3), 277–288, 2017. DOI:10.2217/epi-2017-0118
Fishman, D; Kisand, K; Hertel, C; Rothe, M; Remm, A; Pihlap, M; Adler, P; Vilo, J; Peet, A; Meloni, A; Podkrajsek, K; Battelino, T; Bruserud, Ø; Wolff, A; Husebye, E; Kluger, N; Krohn, K; Ranki, A; Peterson, H; Hayday, A; Peterson, P.
Autoantibody Repertoire in APECED Patients Targets Two Distinct Subgroups of Proteins
Frontiers in Immunology, Vol 8, 2017. DOI: 10.3389/fimmu.2017.00976
Tasa, T; Metsvaht, T; Kalamees, R; Vilo, J; Lutsar, I.
DosOpt: a tool for personalized Bayesian dose adjustment of vancomycin in neonates
Therapeutic Drug Monitoring, 39, 6, 604-613, 2017. DOI: 10.1097/FTD.0000000000000456
Kukushkina, V; Modhukur, V; Suhorutšenko, M; Peters, M; Mägi, R; Rahmioglu, N; Velthut-Meikas, A; Altmäe, S; Esteban, F; Vilo, J; Zondervan, K; Salumets, A; Laisk-Podar, T.
Sci Rep 7, 3916, 2017. DOI: 10.1038/s41598-017-03682-0
Reisberg, S; Iljasenko, T; Läll, K; Fischer, K; Vilo, J.
PLoS ONE, 2+17:12 (7), e0179238−e0179238. DOI: 10.1371/journal.pone.0179238.
Muromägi, A; Sirts, K; Laur, S.
Linear Ensembles of Word Embedding Models
Proceedings of the 21st Nordic Conference on Computational Linguistics: NoDaLiDa, Gothenburg, Sweden, 22.-24.05.2017. Linköping University Electronic Press, 96−104.
Reimand J; Arak T; Adler P; Kolberg L; Reisberg S; Peterson H; Vilo J.
g:Profiler-a web server for functional interpretation of gene lists (2016 update)
Nucleic Acids Research, 2016, gkw199. DOI: 10.1093/nar/gkw199
Roberto, G; Leal, I; Sattar, N; Loomis, AK; Avillach, P; Egger, P; van Wijngaarden, R; Ansell, D; Reisberg, S; Tammesoo, ML; Alavere, H; Pasqua, A; Pedersen, L; Cunningham, J; Tramontan, L; Mayer, MA; Herings, R; Coloma, P; Lapi, F; Sturkenboom, M … Gini, R.
Identifying Cases of Type 2 Diabetes in Heterogeneous Data Sources: Strategy from the EMIF Project
PLoS ONE, 2016:11 (8), e0160648. DOI: 10.1371/journal.pone.0160648.
Orasmaa, S; Petmanson, T; Tkatšenko, A; Laur, S; Kaalep, HJ.
EstNLTK – NLP Toolkit for Estonian
Proceedings of the Tenth International Conference on Language Resources and Evaluation (LREC 2016): The International Conference on Language Resources and Evaluation; Portorož, Slovenia. 2460−2466.
Kolde, R; Märtens, K; Lokk, K; Laur, S; Vilo, J.
Bioinformatics, 2016, btw304. DOI: 10.1093/bioinformatics/btw304.
Peterson, P; Tserel, L; Kolde, R; Limbach, M; Tretyakov, K; Kasela, S; Kisand, K; Saare, M; Vilo, J; Metspalu, A; Milani, L.
Sci Rep 5, 13107, 2016. DOI: 10.1038/srep13107
Kolde, R; Vilo, J.
GOsummaries: an R Package for Visual Functional Annotation of Experimental Data
F1000Res. 4:574, 2015. DOI: 10.12688/f1000research.6925.1
Metsalu, T; Vilo, J.
Nucleic Acids Research, Vol 43, Issue W1, pages W566–W570, 2015. DOI: 10.1093/nar/gkv468
Örd, T; Örd, D; Adler, P; Vilo, J; Örd, T.
Molecular Cell Research,
Vol 1853, Issue 10, Part A, ages 2492-2505, 2015. DOI: 10.1016/j.bbamcr.2015.06.006.
Reisberg, S ; Talvik, HA; Koppel, K; Laur, S; Vilo, J.
Bogdanov, D; Kamm, L; Laur, S; Pruulmann-Vengerfeldt, P; Talviste, R; Willemson, J.
Privacy-preserving statistical data analysis on federated databases
Privacy Technologies and Policy: Annual Privacy Forum 2014, 20.-21. mai 2014, Ateena, Kreeka. DOI: 10.1007/978-3-319-06749-0_3.
Reisberg, S; Sirel, R; Kalda, R; Merzin, M; Pruulmann, J; Vilo, J.
Elektrooniliste terviselugude analüüsimise võimalused Tartu perearstide infosüsteemi näitel
Eesti Arst, 2013:92 (8), 452−459.
Kamm, L; Bogdanov, D; Laur, S; Vilo, J.
A new way to protect privacy in large-scale genome-wide association studies
Bioinformatics, 2013:29 (7), 886−893. DOI: 10.1093/bioinformatics/btt066.
Tkachenko, A; Petmanson, T; Laur, S.
Named Entity Recognition in Estonian
Proceedings of the 4th Biennial International Workshop on Balto-Slavic Natural Language Processing, Sofia, Bulgaria, 8-9 August 2013. ACL: Omnipress, 78−83.
Altmäe, S; Reimand, J; Hovatta, O; Zhang, P; Kere, J; Laisk, T; Saare, M; Peters, M; Vilo, J; Stavreus-Evers, A; Salumets, A.
Research resource: interactome of human embryo implantation: identification of gene expression pathways, regulation, and integrated regulatory networks
Molecular Endocrinology, Vol 26, Issue 1, pages 203–217, 2012. DOI: 10.1210/me.2011-1196
Krug, A.K; Kolde, R; Gaspar, J.A; Rempel, E; Balmer, N.V; Meganathan, K; Vojnits, K; Baquié, M; Waldmann, T; Ensenat-Waser, R; Jagtap, S; Evans, R.M; Julien, S; Peterson, H; Zagoura, D; Kadereit, S; Gerhard, D; Sotiriadou, I; Heke, M; Natarajan, K; Henry, M; Winkler, J; Marchan, R; Stoppini, L; Bosgra, S; Westerhout, J; Verwei, M; Vilo, J; et al.
Arch Toxicol 87, 123–143, 2013. DOI: 10.1007/s00204-012-0967-3
Bogdanov, D; Jagomägis, R; Laur, S.
A universal toolkit for cryptographically secure privacy-preserving data mining
In: Proceedings of the Pacific Asia Workshop on Intelligence and Security Informatics 2012 (112−126).
Kolde, R; Laur, S; Adler, P; Vilo, J.
Robust Rank Aggregation for gene list integration and meta-analysis
Bioinformatics, 2012:28 (4), 573−580. DOI: 10.1093/bioinformatics/btr709
Tretyakov, K.; Laur, S.; Vilo, J.
G = MAT: Linking Transcription Factor Expression and DNA Binding Data
PLoS ONE, 2011:6 (1), e14559. DOI: 10.1371/journal.pone.0014559.
Ilmjärv, S; Luuk, H; Laur, S; Vasar, E; Vilo, J.
Non-parametric probe-level estimation of differential expression
In: . 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational Biology, Vienna (Austria), 2011.
Jänes, J; Laur, S; Kolka, I.
Detection and characterisation of Hα emission lines from Gaia BP/RP spectra
C.A.L. Bailer-Jones. Classification and discovery in large astronomical surveys (71−75). Melville, New York: AIP.
Bogdanov, D; Laur, S; Willemson, J.
Sharemind: a framework for fast privacy-preserving computations
Computer Security – ESORICS 2008: 13th European Symposium on Research in Computer Security Málaga, Spain, 192−206. DOI: 10.1007/978-3-540-88313-5_13.
Laur, S; Lipmaa, H; Mielikäinen, T
Cryptographically Private Support Vector Machines
KDD-2006: The Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Philadelphia, USA, 2006, 618−624.
Lipmaa, H; Mielikäinen, T; Laur, S
Private Itemset Support Counting
Seventh International Conference on Information and Communications Security, ICICS ’05, 2005:97−111.